PhysioNet News

WFDB Software Package

Over 70 open-source applications for signal processing, analysis, and more, all built on a stable and easy-to-use library that can be incorporated into your own software. Latest update: Friday, 8 March 2019 (summary here).

2019

19 February 2019 12:00:00 AM EST New Database Added: NIFEADB

The Non-Invasive Fetal ECG Arrhythmia Database (NIFEA DB) provides a series of fetal arrhythmias recordings (n=12) and a number of control normal rhythm recordings (n=14) performed using the non-invasive fetal electrocardiography (NI-FECG) technique.

8 February 2019 12:00:00 AM EST PhysioNet/CinC Challenge 2019

The PhysioNet/Computing in Cardiology Challenge 2019 has now begun! This year's topic is prediction of sepsis from clinical data. We are delighted to announce that this year's Challenge is being sponsored by the Gordon and Betty Moore Foundation, Google and Mathworks.

2 February 2019 12:00:00 AM EST New Software and Tutorial: Generalized Multiscale Entropy (GMSE)

GMSE is a new computational tool for quantifying the volatility of time series. This work extends the multiscale entropy (MSE) algorithm currently available on PhysioNet. The GMSE method was first described in Costa M., Goldberger A.L. Generalized Multiscale Entropy Analysis: Application to Quantifying the Complex Volatility of Human Heartbeat Time Series. Entropy 2015;17:1197-1203.

29 January 2019 12:00:00 AM EST New Database Added: MIMIC CXR

MIMIC-CXR is a large, publicly-available database comprising of de-identified chest radiographs. The dataset contains 371,920 chest x-rays associated with 227,943 imaging studies. This database is described in Johnson AEW, Pollard TJ, Berkowitz S, Greenbaum NR, Lungren MP, Deng C-Y, Mark RG, Horng S. MIMIC-CXR: A large publicly available database of labeled chest radiographs. arXiv (2019).

2018

17 December 2018 12:00:00 AM EST New Database Added: EEGMAT

The database contains EEG recordings of subjects before and during the performance of mental arithmetic tasks.

13 December 2018 12:00:00 AM EST New Database Added: ECGCIPA

ECG effects of ranolazine, verapamil, lopinavir+ritonavir, chloroquine, dofetilide, diltiazem, and dofetilide+diltiazem in a small sample size clinical study. The ECGCIPA database contains multi-channel ECG recordings of 60 subjects participating in the CiPA ECG validation study.

28 November 2018 12:00:00 AM EST Physiological Measurement Focus Issue

The Journal of Physiological Measurement is now accepting submissions in the focus issue: Automated Analysis of Arousals, Sleep and Sleep-Related Disorders Using Physiological Time Series. Please included updated results from the test dataset if you develop a new algorithm. Note that the scope does not confine you to the data and topic of this year's Challenge. The deadline is set for the end of February 2019.

16 November 2018 12:00:00 AM EST New Toolkit Added: dSQI

The advent of telehealth applications and remote patient monitoring has led to an increasing need for continuous signal quality monitoring to ensure high diagnostic accuracy of the recordings. Cardiovascular diseases often manifest electrophysiological anomalies, therefore the electrocardiogram (ECG) is one of the most used signals for diagnostic applications. Various types of noise and artifacts are not uncommon in ECG recordings and assessing the quality of the signal is essential prior to any clinical interpretation. In this study, a dynamic signal quality index (dSQI) is introduced using a new time-frequency template-based approach.

14 November 2018 12:00:00 AM EST New Database Added: RVMH1

Functional metrics of autonomic control of heart rate, including baroreflex sensitivity, have been shown to be strongly associated with cardiovascular risk. A decrease in baroreflex sensitivity with aging is hypothesized to represent a contributing causal factor in the etiology of primary hypertension. To assess baroreflex function in human subjects, two complementary methods to simulate the response in heart rate elicited by the Valsalva maneuver were developed and applied to data obtained from a cohort of healthy normal volunteers.

04 October 2018 12:00:00 AM EST New Database Added: CVES

This database contains multimodal data from a large study investigating the effects of ischemic stroke on cerebral vasoregulation. The cross sectional study compared 60 subjects who suffered strokes, to 60 control subjects, collecting the following data for each patient across multiple days: transcranial doppler of cerebral arteries, 24-h blood pressure numerics, high resolution waveforms (ECG, blood pressure, CO2 and respiration) during various movement tasks, 24-h ECG, EMG, and accelerometer recordings, and gait pressure recordings during a walking test.

30 August 2018 12:00:00 AM EST New Database Added: CULM

The Complex Upper-Limb Movements database contains hand trajectory data from ten subjects undergoing writing tasks, used to model motor primitives.

29 August 2018 12:00:00 AM EST New Database Added: TPEHGT

The Term-Preterm ElectroHysteroGram DataSet with Tocogram (TPEHGT DS) contains 26 four-signal 30-min uterine EHG records, i.e., three EHG signals accompanied by a simultaneously recorded external tocogram measuring mechanical uterine activity (TOCO signal) of pregnant women, and another five 30-min uterine records (EHG signals and TOCO signal) of non-pregnant women.

17 July 2018 12:00:00 AM EST Database Expanded: sleep-edfx

The sleep-edf database has been expanded to contain 197 whole-night PolySomnoGraphic sleep recordings, containing EEG, EOG, chin EMG, and event markers. Some records also contain respiration and body temperature.

20 June 2018 12:00:00 AM EST New Database Added: BIDMC

This dataset contains signals and numerics extracted from the much larger MIMIC II matched waveform Database, along with manual breath annotations made from two annotators, using the impedance respiratory signal.

07 June 2018 12:00:00 AM EST New Database Added: VOICED

This database includes 208 voice samples, from 150 pathological, and 58 healthy voices.

15 May 2018 12:00:00 AM EST New Software: PCST

The PhysioNet Cardiovascular Signal Toolbox is an open-source modular program for calculating heart rate variability (HRV) implemented in Matlab with evidence-based algorithms and output formats. The Toolbox is compatible with 64-bit MATLAB on GNU/Linux, Mac OS X, and MS-Windows.

02 May 2018 12:00:00 AM EST New Software: GEH

These software scripts calculate Global Electrical Heterogeneity scores of ecg signals, which characterize the degree of heterogeneity of the total recovery time across the ventricles.

21 February 2018 12:00:00 AM EST PhysioNet/CinC Challenge 2018

The 2018 PhysioNet/Computing in Cardiology Challenge is now open. This year's Challenge, "You Snooze, You Win", is focused on the problem of automatically detecting disturbances in a patient's sleep. Given a collection of physiological signals recorded during sleep, including EEG, ECG, and EMG, participants are invited to develop an algorithm to automatically identify arousal events, and will be scored based on how well their algorithm's results agree with those of expert human annotators. More information can be found at https://physionet.org/challenge/2018/.

07 February 2018 12:00:00 AM EST New Database Added: SLEEPBRL

The database contains 32 records of non-contact sleep monitoring by a bioradar. The records are accompanied by results of sleep scoring, based on polysomnography according to the rules of the American Academy of Sleep Medicine.

2 February 2018 12:00:00 AM EST Challenge Papers Available

All the papers from the Challenge along with their corresponding PDFs are now available. The links to the final source code representing their score will be posted soon.

24 January 2018 12:00:00 AM EST New Database Added: CUILESS16

The Concept Unique Identifier (CUI)-less database contains a corpus of "CUI-less" concepts taken from the SemEval2015 Task 14 that have been assigned CUIs. The annotation process allows assignment of CUIS from any Unified Medical Language System (UMLS) semantic group and compositional normalization using more than one CUI per disease entity. Concepts are mapped to SNOMED CT as represented in the September 2016 version found in Unified Medical Language System (UMLS) 2016AB.

09 January 2018 12:00:00 AM EST New Database Added: PWAVE

This database contains reference p-wave annotations for twelve signals from the MIT-BIH arrhythmia database.

2017

13 December 2017 12:00:00 AM EST New Research Approach

Drs. Madalena Costa and Ary Goldberger, members of the PhysioNet team, have recently published an article about heart rate fragmentation in Science Trends. Heart rate fragmentation is a new approach to conceptualizing and measuring heart rate dynamics. The Science Trends article provides links to two studies recently published in the journal Frontiers in Physiology, Heart Rate Fragmentation: A New Approach to the Analysis of Cardiac Interbeat Interval Dynamics and Heart Rate Fragmentation: A Symbolic Dynamical Approach.

20 October 2017 12:00:00 AM EST New Database Added: TAPPY

The dataset contains keystroke logs collected from over 200 subjects, with and without Parkinson's Disease (PD), as they typed normally on their own computer (without any supervision) over a period of weeks or months (having initially installed a custom keystroke recording app, Tappy). This dataset has been collected and analyzed in order to indicate that the routine interaction with computer keyboards can be used to detect changes in the characteristics of finger movement in the early stages of PD.

20 October 2017 12:00:00 AM EST New Database Added: WRIST

This database contains wrist PPGs recorded during walking, running and bike riding. Simultaneous motion estimates are collected using both accelerometers and gyroscopes to give multiple options for the removal of motion interference from the PPG traces. A reference chest ECG is included to allow a gold-standard comparison of heart rate during exercise.

28 September 2017 12:00:00 AM EST New Database Added: PMD

The Pressure Map Dataset for In-bed Posture Classification database contains in-bed posture pressure data from multiple adult participants using two different types of pressure sensing mats. The dataset and its collection methods are described in A pressure map dataset for posture and subject analytics.

27 September 2017 12:00:00 AM EST New Database Added: OSV

The Pattern Analysis of Oxygen Saturation Variability database contains one hour oxygen saturation measurements of 36 patients, used for the analysis of oxygen saturation variability. The dataset and its collection methods are described in Pattern Analysis of Oxygen Saturation Variability in Healthy Individuals: Entropy of Pulse Oximetry Signals Carries Information about Mean Oxygen Saturation.

26 September 2017 12:00:00 AM EST New Database Added: EARH

The Evoked Auditory Responses in Hearing Impaired database contains evoked Auditory Brainstem Response (ABR) and Otoacoustic Emission (OAE) recordings in eight hearing impaired listeners, in response to tone-burst stimuli across a wide range of levels. The dataset and its collection methods are described in Objective estimation of loudness growth in hearing-impaired listeners.

10 August 2017 12:00:00 AM EST New Database added: Quantitative Dehydration Estimation

The quantitative dehydration estimate database contains bioimpedance measurements, temperature measurements, salivary samples, and sweat samples, used in quantitative estimation of dehydration (total body water loss).

9 August 2017 12:00:00 AM EST New Database added: MIMIC-III Waveform Database

The MIMIC-III Waveform Database has been released, containing our largest collection to date of physiologic signals collected by bedside patient monitors in adult and neonatal intensive care units. Over 44,000 recordings have been added to the existing MIMIC-II Waveform Database, for a total of over 67,000 recordings and over three million hours of waveform data. For about one third of the database (about 22,000 recordings from 10,000 patients), extensive clinical information is also available to qualified researchers via the MIMIC-III Clinical Database.

19 July 2017 12:00:00 AM EST New Database added: A Non-EEG Dataset for Assessment of Neurological Status

The database contains non-EEG physiological signals collected at Quality of Life Laboratory at University of Texas at Dallas, used to infer the neurological status of 20 healthy subjects. The data collected consists of electrodermal activity, temperature, acceleration, heart rate, and arterial oxygen level. A description of the dataset and its collection methods are described in A Non-EEG Biosignals Dataset for Assessment and Visualization of Neurological Status.

19 July 2017 12:00:00 AM EST New Database added: University of Cagliari ElectroTastegram Database (PROP)

The University of Cagliari electroTastegram database contains 39 differential biopotential measurements recorded from the tongues of as many healthy voluntary human subjects (16 males, 23 females, equally divided into the three PROP taster status classes), during a stimulation with 30uL, 3.2 mmol/L solution of 6-n-propylthiouracil (PROP). A description of the dataset and its collection methods are described in First objective evaluation of taste sensitivity to 6-n-propylthiouracil (PROP), a paradigm gustatory stimulus in humans.

19 July 2017 12:00:00 AM EST Shiraz University Fetal Heart Sounds Database

The Shiraz University fetal heart sounds database contains fetal and maternal PCG recordings from 109 pregnant women. A description of the dataset and its collection methods are described in An open access database for the evaluation of heart sound algorithms.

12 July 2017 12:00:00 AM EST Video Pulse Signals in Stationary and Motion Conditions

The Video Pulse Signals in Stationary and Motion Conditions dataset contains 40 pulse signal recordings obtained from 15 healthy volunteers (12 men and 3 women between 23 and 35 years). For each subject, there is a simultaneous face video recording, and a finger pulse recording reference system, in a sitting position. The video pulse signals were obtained from videos recorded by two camera models at 15 and 60 frames per second, which were then further processed. The reference finger pulse sensor had a sampling frequency of 1 kHz.

23 May 2017 12:00:00 AM EST New Research Article: Heart Rate Fragmentation: A New Approach to the Analysis of Cardiac Interbeat Interval Dynamics

Members of the PhysioNet team have recently described fragmentation analysis, a new conceptual and methodologic approach to short-term heart rate variability. See Frontiers in Physiology for full text.

19 May 2017 12:00:00 AM EST New Database Added: EEG Signals from an RSVP Task

The EEG Signals from an RSVP Task database contains EEG data from 11 healthy participants upon rapid presentation of images through the Rapid Serial Visual Presentation (RSVP) protocol at speeds of 5, 6, and 10 Hz. A description of the dataset and its collection methods are described in Towards the automated localisation of targets in rapid image-sifting by collaborative brain-computer interfaces.

11 May 2017 12:00:00 AM EST New Database Added: Tai Chi, Physiological Complexity, and Healthy Aging-Gait Database

The Tai Chi, Physiological Complexity, and Healthy Aging-Gait database contains two-channel gait recordings of 87 older adults from the Greater Boston area. Subjects were from a hybrid study design that included a two-arm randomized clinical trial (RCT) along with an additional observational comparison group. A description of the dataset and its collection methods are described in A Systems Biology Approach to Studying Tai Chi, Physiological Complexity and Healthy Aging: Design and Rationale of a Pragmatic Randomized Controlled Trial.

14 February 2017 12:00:00 AM EST National Sleep Research Resource

The National Sleep Research Resource (NSRR) has expanded its research databases and tools, as well as launching a series of tutorials on their use. The NSRR is supported by the National Heart, Lung, and Blood Institute (NHLBI) of the NIH.

09 February 2017 12:00:00 AM EST New Database Added: Preterm Infant Cardio-Respiratory Signals Database

The Preterm Infant Cardio-respiratory Signals (PICS) database contains simultaneous ECG and respiration recordings of ten preterm infants collected from the Neonatal Intensive Care Unit (NICU) of the University of Massachusetts Memorial Healthcare. A description of the dataset and its collection methods are described in Predicting Bradycardia in Preterm Infants Using Point Process Analysis of Heart Rate.

1 February 2017 05:00:00 PM EST

We are excited to announce the opening of the annual PhysioNet/Computing in Cardiology Challenge for 2017: AF Classification from a short single lead ECG recording. A database of over 10,000 ECG recordings is being made freely available exclusively for this competition by AliveCor, and represent a serendipitous sample of patient-initiated recordings of one minute or less. They have all been labeled for rhythm by hand into one of four categories: Normal, Atrial Fibrillation, Other Rhythm or Too Noisy to Process. We challenge the public to develop the most accurate classifier of these data into these four categories. As usual, a portion of these data have been hidden from the public to allow us to objectively assess your algorithms. More information on the Challenge, including data and example code can be found at http://physionet.org/challenge/2017/.

31 January 2017 12:00:00 AM EST New Database Added: STAFF-III Database

The STAFF-III database was acquired during 1995-96 at Charleston Area Medical Center (WV, USA) where single prolonged balloon inflation had been introduced to achieve optimal results of percutaneous transluminal coronary angiography (PTCA) procedures, replacing the typical series of brief inflations. The database consists of standard 12-lead ECG recordings from 104 patients. A description of the dataset and its collection methods are described in Spatial, individual and temporal variation of the high frequency QRS amplitudes in the 12 standard electrocardiographic leads.

19 January 2017 12:00:00 AM EST New Database Added: CHARIS Database

The CHARIS database contains multi-channel recordings of ECG, arterial blood pressure (ABP), and intracranial pressure (ICP) of patients diagnosed with traumatic brain injury (TBI). The data is contributed by members of the CHARIS project which aims to systematize the analysis of relevant physiological signals, and create data-driven algorithms to search for potential predictors of acute clinical events for patients with acute brain injury. A description of the dataset and its collection methods are described in Trending autoregulatory indices during treatment for traumatic brain injury.

2016

20 December 2016 12:00:00 AM EST New Database Added: neuroQWERTY MIT-CSXPD

The neuroQWERTY MIT-CSXPD database contains keystroke logs collected from 85 subjects with and without parkinsons disease (PD). This dataset has been collected and analyzed in order to indicate that the routine interaction with computer keyboards can be used to detect motor signs in the early stages of PD. A description of the dataset and its collection methods are described in Computer keyboard interaction as an indicator of early Parkinson's disease.

16 December 2016 12:00:00 AM EST New Toolkit Added: CHARIS GUI

The Cerebral Haemodynamic Autoregulatory Information System (CHARIS) GUI toolkit contains a Matlab GUI used to display and process intracranial pressure features and relationships with other physiological signals. A description of the algorithms can be found in Trending autoregulatory indices during treatment for traumatic brain injury.

15 September 2016 12:00:00 AM EST New Database Added: ECGDMMLD

The ECG effects of Dofetilide, Moxifloxacin, Dofetilide+Mexiletine, Dofetilide+Lidocaine and Moxifloxacin+Diltiazem in Healthy Subjects database contains data from a randomized, double-blind, 5-period crossover clinical trial in healthy male and female subjects, 18 to 35 years of age, to compare the electrophysiological response of hERG potassium channel blocking drugs with and without the addition of late sodium or calcium channel blocking drugs. The dataset and its collection methods are described in Late sodium current block for drug-induced long QT syndrome: Results from a prospective clinical trial.

3 September 2016 12:00:00 AM EST New Database Added: MSSVEPDB

The MAMEM steady state visually evoked potentials database has been updated with a third experimental dataset.

26 July 2016 12:00:00 AM EST New Database Added: ECGRDVQ

The ECG Effects of Ranolazine, Dofetilide, Verapamil, and Quinidine in Healthy Subjects database contains multi-channel ECG recordings of subjects partaking in a randomized, double-blind, 5-period crossover clinical trial aimed at comparing the effects of four known QT prolonging drugs versus placebo on electrophysiological and other clinical parameters. The dataset and its collection methods are described in Differentiating Drug-Induced Multichannel Block on the Electrocardiogram: Randomized Study of Dofetilide, Quinidine, Ranolazine, and Verapamil.

20 June 2016 12:00:00 AM EST New Database Added: LTMM

The Long Term Movement Monitoring database contains 3-day 3D accelerometer recordings of 71 elder community residents, used to study gait, stability, and fall risk. The dataset and its collection methods are described in Does the Evaluation of Gait Quality During Daily Life Provide Insight Into Fall Risk? : A Novel Approach Using 3-Day Accelerometer Recordings.

9 June 2016 12:00:00 AM EST

The Indwelling Arterial Catheter Clinical dataset, contains clinical data for 1776 patients from the MIMIC-II clinical database. It was the basis for the article: Hsu DJ, et al. The association between indwelling arterial catheters and mortality in hemodynamically stable patients with respiratory failure: A propensity score analysis. Chest, 148(6):1470–1476, Aug. 2015. This dataset was also used by Raffa et al. in Chapter 5 "Data Analysis" of the forthcoming book: Secondary Analysis of Electronic Health Records, published by Springer in 2016.

8 June 2016 12:00:00 AM EST Database Updated: MSSVEPDB

The MAMEM steady state visually evoked potentials database containing 256 channel EEG recordings of 11 subjects under the stimulation of flickering lights has been updated with a second experimental dataset.

19 May 2016 12:00:00 AM EST New Database Added: HBEDB

The Human Balance Evaluation database contains force platform recordings from 193 subjects undergoing stabilography tests. This dataset is contributed by the BMC-Lab of the Federal University of ABC.

29 April 2016 12:00:00 AM EST New Database Added: FECGSYNDB

The fetal ECG synthetic database is a large database of simulated adult and non-invasive fetal ECG (NI-FECG) signals, which provides a robust resource that enables reproducible research in the field. The data is generated using the FECGSYN simulator (visit website). The dataset and its collection methods are described in An Open-Source Framework for Stress-Testing Non-Invasive Foetal ECG Extraction Algorithms.

19 April 2016 12:00:00 AM EST PhysioNet Receives Major Award

The Association for the Advancement of Medical Instrumentation (AAMI) announced that the Foundation’s highest honor, the Laufman-Greatbatch Award for 2016, was being awarded for the creation and development of the PhysioNet Resource.

15 April 2016 12:00:00 AM EST New Database Added: SGAMP

The Squid Giant Axon Membrane Potential database contains single-unit neuronal recordings of squid giant axons in response to stimulus currents. The membrane potential and stimulus current are given for a total of 170 trials across 8 different axons. The dataset and its collection methods are described in Noisy Inputs and the Induction of On-Off Switching Behavior in a Neuronal Pacemaker.

15 April 2016 12:00:00 AM EST New Database Added: MSSVEPDB

The MAMEM steady state visually evoked potentials database contains 256 channel EEG recordings of 11 subjects under the stimulation of flickering lights. The dataset and its collection methods are described in Comparative evaluation of state-of-the-art algorithms for SSVEP-based BCIs.

12 April 2016 12:00:00 AM EST New Software Package Added: MPP

The Multiscale Poincare Plots package contains MATLAB scripts used to visualize time series by plotting Poincare plots of the original signal course grained at multiple time scales. A detailed description of the algorithm can be found in Multiscale Poincare plots for visualizing the structure of heartbeat time series.

10 April 2016 12:00:00 AM EST New Software Package Added: HSS

The Logistic Regression HSMM based Heart Sound Segmentation package contains MATLAB code used to segment phonocardiogram (PCG) recordings, and detect the four states of the heart cycle. This state of the art segmentation code by Springer is used in the sample entry of the 2016 PhysioNet/CinC Challenge. A detailed description of this segmentation algorithm can be found in Logistic Regression-HSMM-based Heart Sound Segmentation.

09 March 2016 12:00:00 AM EST Model of Heart Rate Variability Including the Effect of Sleep Stages

The newly contributed software for Modeling of Heart Rate Variability Including the Effect of Sleep Stages implements a model for simulating healthy nighttime heart rate variability based on the properties of sleep observed in real data. Also included are 20 RR time series generated by the model. The model was first proposed in “Modeling heart rate variability including the effect of sleep stages,” by Soliński et al in CHAOS 26, 023101 (2016).

04 March 2016 12:00:00 AM EST PhysioNet/CinC Challenge 2016

We are pleased to announce the 2016 PhysioNet/Computing in Cardiology Challenge: Classification of Normal/Abnormal Heart Sound Recordings. For this year's Challenge, we have released a collection of 3,125 phonocardiograms from a variety of clinical and non-clinical sources. We invite participants to develop algorithms to determine, based on a short heart sound recording, whether the patient should be referred on for an expert diagnosis.

04 March 2016 12:00:00 AM EST New Software Package Added to Physiotoolkit: TEWP

The Transfer Entropy With Partitioning package is a repository of MATLAB functions that can estimate transfer entropy (information flow) from one time series to another using a non-parametric partitioning algorithm. Also included is an example data set that the implemented algorithms can be applied to. These algorithms are used and described in Transfer Entropy Estimation and Directional Coupling Change Detection in Biomedical Time Series.

04 March 2016 12:00:00 AM EST New Database Added: MMGDB

The MMG Database contains uterine magnetomyographic (MMG) signals recorded using the 151 channel SARA (SQUID Array for Reproductive Assessment) system installed at UAMS, Little Rock, USA. The dataset and its collection methods are described in Characterizing the Propagation of Uterine Electrophysiological Signals Recorded with a Multi-Sensor Abdominal Array in Term Pregnancies

18 February 2016 12:00:00 AM EST New Database Added: PRCP

The Physiologic Response to Changes in Posture Database contains a collection of physiological recordings (ECG and ABP) from tenhealthy subjects in response to a slow tilt, a fast tilt, and a standing-up maneuver. The dataset and its collection method are described in Circulatory Response to Passive and Active Changes in Posture

2015

18 December 2015 12:00:00 AM EST New Database Added: MACECGDB

The Motion Artifact Contaminated ECG Database contains short duration ECG signals recorded from a single healthy 25-year-old male performing different physical activities to study the effect of motion artifacts on ECG signals and their sparsity. The dataset and its collection method are described in Rate-Adaptive Compressed-Sensing and Sparsity Variance of Biomedical Signals

25 November 2015 12:00:00 AM EST Database updated: Long-Term ST Database

The kl-single-uncentralized subdirectory contains another new set of single lead KL basis functions for the ST segments, and their subsequent normalized and non-normalized KL coefficients. The set of clean heart beats from which the ST segments are extracted slightly differ from those of the previously derived 2011 KL dataset. More importantly, this time the KL coefficients are not centralized by their mean values.

9 November 2015 12:00:00 AM EST New software package added to PhysioToolkit: Data Chromatix

Data Chromatix is a technique for visualizing trends in biomedical signals by bringing memory of the system's past behavior into the current display window. This package was developed at the Wyss Institute at Harvard by A. Burykin, S. Mariani, T. Silva and T. Henriques, and is described in "Remembrance of time series past: simple chromatic method for visualizing trends in biomedical signals," Burykin A, Mariani S, Henriques T, Silva TF, Schnettler WT, Costa MD, Goldberger AL. Physiol Meas 2015;36(7):N95.

9 November 2015 12:00:00 AM EST New software package added to PhysioToolkit: ECG-kit

ECG-kit This toolbox is a collection of MATLAB tools that Mariano Llamedo Soria used, adapted or developed during his PhD and post-doc work with the Besicos group at University of Zaragoza, Spain and at the National Technological University of Buenos Aires, Argentina. The main feature of this toolbox is that it allows the use of several popular algorithms for ECG processing, including: Algorithms from Physionet’s WFDB software package; QRS detectors, such as gqrs, wqrs, wavedet, ecgpuwave, Pan & Tompkins, EP limited; Wavelet-based ECG delineator; Pulse wave detectors as wabp and wavePPG; and a2hbc and EP limited heartbeat classifiers.

19 May, 2015 06:00:00 PM EST New Database Added: SHAREEDB

Smart Health for Assessing the Risk of Events via ECG (SHAREE database). The SHAREE database was developed in order to investigate the possibility of identifying hypertensive subjects at higher risk to develop vascular events based on Heart Rate Variability analysis. The database was created by Paolo Melillo, Raffaele Izzo, Ada Orrico, Paolo Scala, Marcella Attanasio, Marco Mirra, Nicola De Luca, and Leandro Pecchia as part of the “Smart Health and Artificial intelligence for Risk Estimation” (SHARE) project, which seeks ways to prevent cardiovascular events and falls in people over 65.

9 May, 2015 12:00:00 AM EST New Database Added: EHGDB

Icelandic 16-electrode Electrohysterogram Database (EHGDB). A new dataset of 122 16-electrode EHG recordings performed on 45 pregnant Icelandic women has been published in PhysioBank. The data was contributed by Ásgeir Alexandersson, who performed the recordings at Akureyri Primary Health Care Centre, Akureyri Hospital and Landspitali University Hospital. A detailed description of the database has been published in Nature's new journal Scientific Data 2, Article number: 150017 (2015).

15 February, 2015 12:00:00 AM EST PhysioNet/CinC Challenge 2015

The PhysioNet/Computing in Cardiology Challenge 2015 is now open. This year's challenge is 'Reducing False Arrhythmia Alarms in the ICU'. False alarms in the ICU can lead to a disruption of care, impacting both the patient and the clinical staff through noise disturbances, desensitization to warnings and slowing of response times, leading to decreased quality of care. To address this issue, competitors are challenged to devise a method of processing all the available data to reduce false alarms with minimal or no effect on true (vital) alarms.

31 January, 2015 12:00:00 PM EDT New software packages added to PhysioToolkit!

Two new software packages have been added to PhysioToolkit! The first package, D3Maps, is a tool for visualizing the behavior of complex systems by means of the dynamical density delay mapping technique. This package was developed at the Wyss Institute by A. Burykin, L. Citi, M.D. Costa and A.L. Goldberger. The second software package, Multiscale Multifractal Analysis, is a time series analysis method designed to describe scaling properties of fluctuations within a signal. The software package was contributed by Jan Gierałtowski from Warsaw University of Technology.

23 January 2015 12:00:00 AM EDT PhysioNet approved as repository for Nature's Scientific Data!

PhysioNet is pleased to announce that we are now an officially recommended repository for the journal Scientific Data (SciData). SciData is an open-access, peer-reviewed publication from the Nature Publishing Group focusing on scientifically valuable research datasets. SciData's primary article-type, the Data Descriptor, is designed to make your data more discoverable, interpretable and reusable. Users who have contributed data to PhysioNet are now invited to submit their unpublished data as a Data Descriptor to Scientific Data! Pre-submission enquires are welcome at scientificdata@nature.com.

2014

12 December 2014 12:00:00 AM EDT New Database Added: CEBSDB

Combined measurement of ECG, Breathing, and Seismocardiograms Database (CEBSDB). A dataset of 60 records from 20 volunteers has been contributed to PhysioBank by Miguel Angel Garcia Gonzalez and Ariadna Argelagos Palou from the Universitat Politecnica de Catalunya. Each record contains two ECGs, a respiration, and a seismocardiogram signals. The database was designed to check if errors in RR series are influenced by breathing, and if there is a significant variability in RR series estimated from ECGs versus seismocardiograms.

4 November 2014 9:00:00 EDT New Softwares added to PhysioToolkit

Two new software packages have been added to the PhysioTookit library. FECGSyn is a new Foetal ECG Waveform Generator contributed by Joachim Behar and Gari Clifford's group at University of Oxford. The second package, the Random Search Toolbox, is a MATLAB toolbox for selecting model hyper-parameters via random search, also contributed by Joachim Behar and Gari Clifford's group.

30 July 2014 10:00:00 EDT Computing Cardiology 2014/Critical Data Marathon

Two upcoming events this September at MIT will be of interest to PhysioNet users. The first is the International Critical Care Data Mining Marathon, a weekend event (5-7 September 2014). The International Critical Care Data Mining Marathon will bring together teams of engineers and clinicians to develop tools and crowd-source knowledge in clinical data, with a hands-on data mining workshop using the MIMIC II Database. The second event is the 2014 Computing in Cardiology conference held from September 7-10, 2014 at Cambridge, Massachusetts. Computing in Cardiology is an international scientific conference that has been held annually since 1974 and hosting PhysioNet Challenges since 2000. This conference provides a forum for scientists and professionals from the fields of medicine, physics, engineering and computer science to discuss their current research in topics pertaining to computing in clinical cardiology and cardiovascular physiology.

4 April 2014 10:00:00 EDT National Sleep Research Resource

PhysioNet users with an interest in sleep physiology now have access to the web site of the National Sleep Research Resource (NSRR), which hosts large annotated collections of EDF polysomnograms and related clinical data elements from well-characterized research cohorts and clinical trials. The first data set available includes over 8,000 studies from exams 1 and 2 of the Sleep Heart Health Study, with scheduled new data releases every quarter from additional data sets. NSRR also provides open-source software for viewing and analyzing these data.

6 March 2014 13:00:00 EST ECG-ID Database

A set of 310 ECGs from 90 volunteers has been created and contributed to PhysioBank by Tatiana Lugovaya, who used the data in her master's thesis on the topic of biometric human identification using the ECG. An excellent summary of this thesis, with a discussion of the challenges in using ECGs as biometrics, and a comparison of the author's methods and results with those of three previous studies, is also available.

4 March 2014 18:30:00 EST ERP-based Brain-Computer Interface recordings

This dataset, created and contributed by Luca Citi, Riccardo Poli, and Caterina Cinel, was generated as part of a study aimed at identifying the factors limiting the performance of brain-computer interfaces (BCIs) based on event-related potentials (ERPs), in order to improve the transfer rate and the usability of these interfaces. Twenty recordings of each of 10 participants include annotated 64-channel EEGs and 4-channel EOGs, generated while the participants focused on specified target characters displayed by a traditional matrix speller.

3 March 2014 18:30:00 EST Motion Artifact Contaminated fNIRS and EEG Data

This data collection, contributed to PhysioBank by Kevin Sweeney and colleagues at the National University of Ireland in Maynooth, contains examples of functional near-infrared spectroscopy (fNIRS) and electroencephalogram (EEG) recordings that have been created for evaluating artifact removal methods. In each such recording, one or two pairs of similar physiological signals have been acquired from transducers in close proximity. One signal of each pair is contaminated by motion artifact, documented in each case by simultaneously recorded outputs of 3-axis accelerometers affixed to each transducer.

18 February 2014 11:30:00 EST CTU-UHB Intrapartum Cardiotocography Database

This collection of 552 CTGs from the Czech Technical University (CTU) in Prague and the University Hospital in Brno (UHB) was carefully selected from 9164 recordings recently collected at UHB. Each recording is up to 90 minutes long, and includes a fetal heart rate time series, a uterine contraction signal, and maternal, delivery, and fetal clinical details.

2013

28 October 2013

Two upcoming events at MIT will be of interest to users of the MIMIC II Databases. The first is the Critical Data Marathon, a weekend event (3-5 January 2014) run in partnership with Sana Mobile and H@cking Medicine. The Critical Data Marathon will bring together teams of engineers and clinicians to develop tools and crowd-source knowledge and insight in clinical data, with a hands-on data mining workshop using the MIMIC II Clinical Database. The second event is a conference, Critical Data, on 7 January 2014, which aims to bring together clinicians, clinical researchers, and data scientists to discusss the opportunities and challenges surrounding meaningful reuse of clinical data. Remote participation is possible for those unable to attend these events at MIT.

24 October 2013

A greatly expanded version of the Sleep-EDF Database, of which a small subset was previously contributed in 2002, is now available in PhysioBank. The database now includes 61 full-night polysomnograms of healthy subjects and of subjects with mild difficulty falling asleep, with accompanying expert annotations of sleep stages.

24 October 2013

Over 60 teams of participants from around the world participated in the PhysioNet/CinC Challenge 2013 on the subject of noninvasive fetal ECG. The scores of the top-ranking teams have been posted. Also available are the slides presented by the 28 participants who discussed their work during sessions dedicated to the Challenge at Computing in Cardiology 2013 in Zaragoza, Spain.

22 August 2013

The WFDB Toolbox for MATLAB is a collection of MATLAB functions for reading, writing, and manipulating (processing) PhysioBank data, implemented as system calls to WFDB Software Package applications through Java and MATLAB wrappers. A new implementation of the toolbox provides faster operation and a significantly expanded set of functions.

2 August 2013

Participants in the PhysioNet/CinC Challenge 2013 may submit Phase 2 entries from now until noon GMT on 25 August. An autoscorer returns instant results for events 4 and 5. Following the deadline, final scores for all entries will be available, and participants will have a week to submit a single Phase 3 entry.

29 April 2013

PhysioNet is one of four NIH-supported initiatives highlighted in a recent White House blog entry ("Big Data is a Big Deal for Biomedical Research") about accelerating the pace of discovery through the use of Big Data. (The others are the Human Connectome Project, the BRAIN Initiative, and the Cancer Genome Atlas.)

2 April 2013

The open test set B (100 one-minute noninvasive fetal ECG recordings) for Challenge 2013 is now available, together with a supplement of 50 additional recordings in training set A.

21 February 2013

This year's PhysioNet/Computing in Cardiology Challenge invites participants to develop software capable of detecting fetal QRS complexes in multichannel noninvasive ECG recordings, making accurate estimates of fetal heart rate, RR intervals, and QT intervals. An annotated training set of 25 one-minute recordings is available now; a sample entry, software for scoring, and test recordings will be available shortly.

2012

4 October 2012

Open access is now available for the first time to a set of 4000 patient records included in the MIMIC II Clinical Database Demo, a downloadable disk image that can be run within a virtual machine or from a bootable USB flash drive or DVD. Since all of the required software, including the operating system, is pre-installed and configured, it is an ideal way to begin exploring the MIMIC II Clinical Database (currently including more than 32,000 patient records) on a spare PC or Intel Mac with an absolute minimum of setup time.

31 August 2012

Final scores in the PhysioNet/CinC Challenge 2012 have now been posted. Participants will present their work on the challenge at CinC 2012 in Krakow, 9-12 September.

17 August 2012

Inspired by the PhysioNet/CinC Challenge 2011 (Improving the quality of ECGs collected using mobile phones), the journal Physiological Measurement has devoted a focus issue [2012 Sept;33(9)] to the subject of signal quality in cardiorespiratory monitoring, with eleven articles on this topic, including nine written by Challenge participants.

9 August 2012

PhysioBank has received a contribution of five-minute multichannel fetal ECG recordings, with cardiologist-verified annotations of all fetal heart beats, from five women in labor, from the Medical University of Silesia, Poland. Each record of the Abdominal and Direct Fetal ECG Database includes four signals from the maternal abdomen and a simultaneously recorded reference direct fetal ECG from the fetal scalp; all signals are sampled at 1 KHz with 16-bit resolution.

3 August 2012

The creators of the OB-1 Database of fetal ECGs seek collaborators in their PhysioNetWorks project to complete the database and to use it to investigate improved diagnoses of fetal distress. A sample recording from the database is now available in PhysioBank, while construction of the remainder (including more than 100 additional recordings, with detailed accompanying clinical information) is in progress on PhysioNetWorks.

26 July 2012

The Cyclic Alternating Pattern (CAP) is a periodic EEG activity occurring during NREM sleep, and abnormal amounts of CAP are associated with a variety of sleep-related disorders. The CAP Sleep Database is a collection of 108 polysomnographic recordings from the Sleep Disorders Center of the Ospedale Maggiore of Parma, Italy. Each record includes 3 or more EEG signals together with EOG, chin and tibial EMG, airflow, respiratory effort, SaO2, and ECG signals, and reference sleep stage and CAP annotations, This database is intended to provide a useful number of carefully annotated examples of CAP in a representative variety of pathophysiologic contexts, for development and evaluation of automated CAP analyzers, as well as to support basic studies of the dynamics of CAP.

23 July 2012

A complete set of over 9 million reference beat and rhythm annotations for the Long-Term AF Database has been contributed by MEDICALgorithmics (Warsaw, Poland). The Long-Term AF Database, a collection of 84 long-term ECG recordings (typically 24 to 25 hours each) of subjects with paroxysmal or sustained atrial fibrillation, was contributed to PhysioBank in 2008 by Steven Swiryn and his colleagues at Northwestern University. Michael Tadeusiak of MEDICALgorithmics coordinated the annotation development as a PhysioNetWorks project.

26 June 2012

PhysioBank has received a contribution of continuous blood pressure recordings collected for a study of baroreflex dysfunction in salt-sensitive hypertension in Dahl SS and SSBN13 rats.

27 Mar 2012

The PhysioNet/CinC Challenge 2012 focuses on predicting mortality in ICU patients. Sample entries, test frameworks, scoring functions, and large sets of training and test data are available now.
Update (1 June): Phase 1 of the challenge drew participation from 39 individuals and teams. Phase 2 is now open, until 25 August.

16 Mar 2012

If you have digital recordings of signals or time series, perhaps with annotations, that you would like to study using PhysioToolkit software such as that in the WFDB software package, or that you would like to contribute to PhysioBank, our new tutorial, Creating PhysioBank (WFDB-compatible) Records, should get you started on creating PhysioBank-compatible records from your data.

14 March 2012

Use PhysioBank Record Search in your web browser to find records in PhysioBank that share a desired set of characteristics. The search engine is integrated with the PhysioBank ATM, so that records within search results can be examined individually and marked for further study if desired. The pbsearch software package includes sources for the PhysioBank Record Search web client, the server, a command-line client, and a set of plugins.

6 February 2012

The first release of the PhysioBank Index contains essential information about all of the more than 36,000 records that can be viewed using the PhysioBank ATM. A web-based tool for searching the index is under development (14 March update: see above). Users who are comfortable using standard command-line tools can use them now, to search the index for records with desired characteristics. Our new tutorial provides guidance and examples.
Update (14 March): The pbindex software package is now available; it contains the sources for the software that generates the PhysioBank Index.

29 January 2012

Two new tutorials, How to create and manage a PhysioNetWorks project and How to Write HTML pages for PhysioNet, aim to help members of the research community to create, collaborate on, and publish sharable data and software. Several other tutorials have been updated recently, including A Brief Tour of PhysioNet, which now includes a demonstration of the PhysioBank ATM and an introduction to PhysioNetWorks.

24 January 2012

Our new tutorial, Variability vs. complexity, introduces the study of complex variability, especially in the context of physiology and medicine.

20 January 2012

The PhysioNet/Computing in Cardiology Challenge 2012 is underway. This year's challenge focuses on methods for predicting mortality of ICU patients, using a rich set of physiologic and clinical variables collected from 12,000 patients.

13 January 2012

The MIMIC II Waveform Database Matched Subset is now available. It contains 4,897 waveform records and 5,266 numerics records from the MIMIC II Waveform Database, which have been matched and time-aligned with 2,809 MIMIC II Clinical Database records.

6 January 2012

The MGH/MF Waveform Database Patient Guide is now available. It provides additional information for each recording in the database, including (as available) age, sex, diagnoses, pertinent medical history, ECG interpretation, ventilation, a timeline of events that occurred during the recording, and additional clinical observations.

2011

26 August 2011

Version 3 of the MIMIC II Waveform Database has been publicly released. Version 3 contains 21,422 patient records and is more than 4 times the size of version 2. Using enhanced data recovery techniques, the original raw data dumps have been reprocessed to extract many records that were previously unreadable, and additional raw data dumps collected since the previous release were also processed to obtain many more records.

Also available to qualified investigators via PhysioNetWorks is version 2.6 of the companion MIMIC II Clinical Database, containing data for 32,536 subjects (5880 new since version 2.5) and additional data types (including demographics, procedure (CPT) codes, diagnosis-related groups (DRG codes), Elixhauser comorbidity scores, microbiology test results, and LOINC coding for lab tests).

10 August 2011

Final scores are now available for all events in the PhysioNet/CinC Challenge 2011.

5 August 2011

The deadline for entries in the PhysioNet/CinC Challenge 2011 has now passed. Congratulations and thanks to all who participated! Final scores and ranks are available for event 1 now.

22 April 2011

Event 1 of the PhysioNet/CinC Challenge 2011 is now open. See the Challenge home page for information about submitting entries. If you plan to participate in any of this year's Challenge events, please submit a preliminary event 1 entry no later than noon GMT on Saturday, 30 April 2011. You will be able to revise your entry, and to submit an entry for events 2 and 3, until the final deadline of noon GMT on Monday, 1 August 2011.

19 April 2011

ECGs to be classified in events 1 and 2 of the PhysioNet/CinC Challenge 2011 are now available as individual files, or as a tarball. View them using the PhysioBank ATM (choose Challenge 2011 Test Set B as the Input).

7 March 2011

Participants with all levels of experience are invited to help develop the data set for the 12th annual PhysioNet/CinC Challenge by grading ECGs. Login to PhysioNetWorks and follow the link from your PhysioNetWorks home page to "Diagnostic ECG Annotations" to get started. An award fund of US$2000 will be divided among participants who have contributed in this way.

25 February 2011

Until 1 September 2011: The 12th in our popular annual series of open scientific/engineering competitions is now underway. The 2011 PhysioNet/Computing in Cardiology Challenge addresses the topic of improving ECGs collected using mobile phones.

20 February 2011

PhysioNet welcomes a new mirror, physionet.nlm.nih.gov, hosted at the National Library of Medicine in Bethesda, MD. PhysioNet mirrors around the world provide reliable alternate access to PhysioNet for visitors whose connections to the main servers may be slow. If you would like to host a mirror in your area, see these notes.

13 February 2011

Just released, the MIMIC Importer is software for automating the creation of a PostgreSQL relational database from the MIMIC II Clinical Database flat files that can be downloaded from PhysioNetWorks. The MIMIC Importer, and detailed instructions for using it, are available from the MIMIC II Clinical Database pages on PhysioNetWorks.

9 February 2011

Machine-generated beat and alarm annotations for over 1500 ICU patient records from the MIMIC II Waveform Database are available to qualified PhysioNetWorks members who agree to review and provide corrections for a subset of them. Details are available from the MIMIC II Waveform Database Annotations pages on PhysioNetWorks.

9 February 2011

Version 1.2 of the HRV Toolkit is now available, with expanded options for graphical output.

4 February 2011

PhysioNet now has an RSS feed.

3 February 2011

A database of Evoked Auditory Response in healthy subjects across a wide range of stimulus levels has been contributed to PhysioBank. The data include 24-bit recordings of auditory brain stem response (ABR) and otoacoustic emissions (OAE) signals, and 32-bit computed average responses.

22 January 2011

Version 2.5 of the MIMIC II Clinical Database contains comprehensive clinical data from tens of thousands of ICU patients. The database can be downloaded from PhysioNetWorks or explored online on the web site of the MIMIC Project.

21 January 2011

The Term-Preterm EHG Database, a collection of electrohysterogram (EHG: uterine EMG) recordings obtained at the University Medical Centre Ljubljana from 300 pregnant women, has been contributed to PhysioBank and is now available. The collection includes recordings from 262 women who had full-term pregnancies and 38 whose pregnancies ended prematurely; 162 of the recordings were made before the 26th week of gestation, and 138 later.

1 January 2011

PhysioNet is running on new (faster, larger) servers.

2010

9 June 2010

The CHB-MIT Scalp EEG Database, a collection of EEG recordings of 22 pediatric subjects with intractable seizures, is now available. Subjects were monitored for up to several days following withdrawal of anti-seizure medication to characterize their seizures and assess their candidacy for surgical intervention. In all, the onsets and ends of 182 seizures are annotated.

17 May 2010

An application for anonymizing (de-identifying) EDF and EDF+ files is now available; see edf-anonymize.

20 March 2010

The 11th annual PhysioNet/CinC Challenge is underway, with the goal of developing robust methods for filling gaps in multiparameter physiologic data. Learn about the challenge here.

2009

1 December 2009

Prepare for the PhysioNet/Computers in Cardiology Challenge 2010, Mind the Gap! A set of training data is now available. The Challenge begins on 1 January.

27 November 2009

The entire European ST-T Database, a landmark set of expert-annotated recordings for study of the ECG manifestation of myocardial ischemia and for development and evaluation of methods for quantifying ST and T changes in the ECG, is now available on PhysioNet. Roughly half of the database was previously contributed to PhysioNet in September, 2000; this new contribution makes the entire database available for free use by researchers for the first time.

29 September 2009

PhysioNet is seeking contributions of data from EMG and nerve conduction studies. The Margret and H.A. Rey Institute for Nonlinear Dynamics in Medicine has offered an annual award for the best such contribution.

9 September 2009

A set of 64-channel EEGs from subjects who performed a series of motor/imagery tasks has been contributed to PhysioBank by the developers of the BCI2000 instrumentation system for brain-computer interface research.

7 July 2009

In its issue of June 2009, Chaos has published a special section containing nine papers that address the question "Is the normal heart rate chaotic?". The discussion was initiated last year as a joint effort of Chaos and PhysioNet, which provided a collection of fifteen 20-24 hour RR interval time series derived from three PhysioBank ECG databases as a common focus for investigation of this question.

5 May 2009

We are pleased to announce that a limited distribution of the entire MIMIC II Clinical Database, containing data for over 26,000 subjects, has been contributed to PhysioBank and is now available to qualified researchers. Details are available here.

27 April 2009

Over 1300 records have been added to the MIMIC II Waveform Database, bringing the total to over 4000 multi-parameter records from ICU patients, each typically several days in length, with many that are much longer. The new records include data from 249 neonatal ICU patients, a population not previously represented in PhysioBank. [Numbers of records have been corrected as of 30 July 2009.]

16 March 2009

PhysioBank's Automated Teller Machine, a self-service facility for exploring PhysioBank using a web browser, is now on-line. Replacing the original PhysioBank web services introduced in 2000, the ATM offers a variety of tools for visualizing PhysioBank data and converting them to text, EDF, or .mat files, and more.

5 March 2009

The WFDB Software Package, versions 10.4.17 and later, includes wfdb2mat, a program that converts all or any desired portion of the signals in any PhysioBank or compatible record to a .mat file that can be read by Matlab or Octave. If the original signal files have not been downloaded from PhysioNet, wfdb2mat can read them directly from the PhysioNet server. The .mat files generated by wfdb2mat are also directly readable by dozens of other applications in the WFDB Software Package, including WAVE.

4 February 2009

A few days ago, the first 60 patient records from the MIMIC II Clinical Database were posted, as part of the training set for our annual challenge (see the news item immediately below). A new tutorial, Using the MIMIC II Database, is now available to help challenge participants and others interested in this collection and in linking it with the recorded physiologic signals and time series of vital signs from the same patients in the MIMIC II Waveform Database.

27 January 2009

The 10th annual PhysioNet/Computers in Cardiology Challenge is underway. Participants are invited to identify which ICU patients are likely to experience sudden and severe drops in blood pressure. Successful prediction of these acute hypotensive events may lead to improved care and survival of patients at risk. The Challenge culminates in September with presentations by participants at a dedicated scientific session of Computers in Cardiology in Park City, Utah.

26 January 2009

Heart Rate Variability Analysis with the HRV Toolkit: Basic Time and Frequency Domain Measures is a new tutorial that describes how to use the HRV toolkit (an accompanying software package created for PhysioNet by Joe Mietus) to select and prepare time series of inter-beat intervals and to calculate measurements of the basic time- and frequency-domain HRV statistics that are widely used in the literature. Particular attention is given to techniques for identifying and dealing with outliers, in order to permit reliable determination of measurements.

2008

18 November 2008

TWAnalyser is open-source software for detecting and measuring T-wave alternans in the ECG, originally developed for the recently-concluded PhysioNet/CinC Challenge 2008. Detailed notes on installing and using TWAnalyser are now available.

30 October 2008

The journal Chaos will publish a special issue containing discussion of the question "Is the normal heart rate chaotic?" in 2009. To provide a common focus for investigation of this question, a collection of fifteen 20-24 hour RR interval time series derived from three PhysioBank ECG databases is now available for study.

The Long Term AF Database, a collection of 84 two-lead 24-hour ECG recording of subjects with paroxysmal and sustained atrial fibrillation, is now available.

22 September 2008

Congratulations to the winners of the PhysioNet/CinC Challenge 2008 on the subject of T-wave alternans. Final results are now available: scores, reference rankings of the Challenge 2008 data set, and the open source software contributed by participants in the open source division of the Challenge.

15 May 2008

A collection of multiparameter recordings created to study stress recognition in automobile drivers has been contributed to PhysioNet. The database contains recordings from healthy volunteers taken while they were driving on a prescribed route including city streets and highways in and around Boston. Signals recorded include ECG, EMG, GSR, and respiration.

1 May 2008

The St. Petersburg Institute of Cardiological Technics 12-lead Arrhythmia Database has been contributed to PhysioNet by its creators. It consists of 75 half-hour recordings extracted from 32 Holter records from patients undergoing tests for coronary artery disease, with reference annotation files containing over 175,000 beat annotations in all.

17 March 2008

The PhysioNet/Computers in Cardiology Challenge 2008 is underway. The topic of this, the ninth open challenge in our annual series, is detection and quantification of T-wave alternans.

26 February 2008

A newly posted tutorial describes How to obtain PhysioBank data in text form.

25 February 2008

PhysioBank now includes a large database of Gait in Parkinson's Disease, a collection of multichannel recordings from force sensors beneath the feet of 93 patients with Parkinson's Disease, and 73 healthy controls, collected from three studies.

2007

18 December 2007

The MIMIC II project has contributed software for deidentification of free text in medical records, and a corpus of deidentified text that can be used for development and evaluation of deidentifcation software.

4 December 2007

Papers by the participants in the PhysioNet/Computers in Cardiology Challenge 2007 are now available, and the reference interpretations used to score the Challenge entries have also been posted.

19 November 2007

A new version of the XView toolkit is compatible with the most recent version of X.org's X11 libraries, allowing applications that use XView, such as WAVE and Semia, to be run on Fedora 8.

The PhysioNet mirror kit provides an easy way to set up a self-maintaining mirror of PhysioNet. The original mirror kit has been rewritten to provide simpler setup, faster mirror updates, and enhanced functionality for the mirrors.

9 October 2007

The St. Vincent's University Hospital / University College Dublin Sleep Apnea Database has been contributed to PhysioBank. This database contains 25 full overnight polysomnograms with simultaneous three-channel Holter ECG, from adult subjects with suspected sleep-disordered breathing.

3 October 2007

We congratulate the winners of the PhysioNet / Computers in Cardiology Challenge 2007: Mohamed Mneimneh, Hamid SadAbadi, and Masood Ghasemi. Thanks to all who participated, and who contributed data and expertise to make this event possible.

6 September 2007

The Non-Invasive Fetal Electrocardiogram Database, a series of 55 multichannel abdominal fetal ECG recordings taken from a single subject over a period of 20 weeks, has been contributed to PhysioBank. The recordings are in EDF+ format, and include two thoracic (maternal ECG) signals and three or four abdominal (maternal+fetal ECG) signals.

1 September 2007

PhysioNet begins its ninth year with new funding from two institutes of the National Institutes of Health (NIH): the National Institute of Biomedical Imaging and Bioengineering (NIBIB), and the National Institute of General Medical Sciences (NIGMS). We are deeply grateful for the support of NIBIB and NIGMS, which makes PhysioNet's continued growth possible.

9 August 2007

AF-VP, a model for generating RR intervals in atrial fibrillation, has been contributed to PhysioNet by its authors.

2 August 2007

An extensive comparison of eleven previously described algorithms for cardiac output estimation from arterial blood pressure waveforms has been contributed to PhysioNet. The package includes implementations of each algorithm in Matlab, a selection of records from the MIMIC II database that contain ABP waveforms and "gold standard" thermodilution cardiac output measurements, and a comprehensive discussion of calibration techniques, evaluation methods, and rankings of the algorithms.

1 August 2007

If a standard PhysioNet search doesn't yield what you are looking for, try a PhysioNet GSearch (a customized version of Google's search). See the search help page for PhysioNet GSearch and other options. [Update (13 November 2007): PhysioNet GSearch is now the standard search. The original ht://Dig-based search is still available on the Advanced Search and search help pages.]

31 July 2007

The storage and computational capacities of the master PhysioNet server have been upgraded following a comprehensive set of tests. The digitized signals, trends, and alarms of 2769 long-term records of the MIMIC II Database are now available thanks to the greatly expanded capacity of the new server.

18 June 2007

The creators of the Long-Term ST Database have now contributed all of it (86 complete records) to PhysioNet. Each record is 21 to 24 hours long, and contains 2 or 3 ECG signals, annotated beat-by-beat and with respect to ST episodes, rhythm changes, and signal quality changes.

2 May 2007

The Spontaneous Ventricular Tachyarrhythmia Database (Version 1.0 from Medtronic, Inc.) contains 135 pairs of RR interval time series, recorded by implanted cardioverter defibrillators in 78 subjects. One series of each pair includes a spontaneous episode of ventricular tachycardia or ventricular fibrillation, and the other is a sample of the intrinsic (usually sinus) rhythm.

16 March 2007

A new implementation of CVSim, a cardiovascular simulator that has been used for education and research at MIT and Harvard Medical School for over 20 years, has been contributed to PhysioNet by its authors. CVSim can be launched directly from a web browser with no installation required in most cases.

20 January 2007

The eighth annual PhysioNet/Computers in Cardiology Challenge has begun. This year's Challenge embraces the disciplines of both electrocardiography and (for the first time) imaging. Participants will estimate the location and extent of infarcts using ECG maps, and their estimates will be evaluated using "gold standard" measurements of gadolinium-enhanced MRI data.

2006

16 October 2006

Papers describing the entries in the PhysioNet/Computers in Cardiology Challenge 2006 are now available, as are the final gold-standard QT measurements for the Challenge database.

20 September 2006

The PhysioNet/Computers in Cardiology Challenge 2006 attracted 41 participants, 19 of whom presented papers describing their methods for QT interval measurement at CinC in Valencia. The best score achieved by a manually reviewed entry was 6.67 ms (raw score: 6.65 ms, yield: 0.998), submitted by Mariano Llamedo Soria of the Universidad Tecnologica Nacional FRBA, Buenos Aires, Argentina. In all, seven entries in division 1 received scores below 20 ms. The best score achieved by an automated method was 16.34 ms (raw score: 15.53 ms, yield: 0.951), submitted by Dieter Hayn of ARC Seibersdorf Research GmbH, Graz, Austria. This entry achieved seventh place overall. The best score achieved by an open source automated method was 17.33 ms (raw score: 17.30 ms, yield: 0.998), by Yuriy Chesnokov of the Unilever Centre for Molecular Science Informatics, Cambridge University. This entry achieved ninth place overall, and second among all automated methods. In all, three entrants in divisions 2 and 3 earned scores below 20 ms, and six more received scores below 30 ms. An unofficial entry formed by combining the results of the three top entries in each of divisions 2 and 3 achieved a score of 10.93 ms (raw score: 10.39 ms, yield 0.951).

1 June 2006

Digitized signals from over 1000 long-term records of the MIMIC II Database are now available in PhysioBank. These recordings from patients in intensive care units typically include ECG, ABP, and respiration signals, and are up to several weeks in duration.

12 March 2006

The new wfdb-swig software package makes it easy to read and write PhysioBank files with your own software written in Java, Perl, or Python. The package provides access to the WFDB subroutine library, which also supports software written in C, C++, and Fortran, as well as Matlab (via the WFDB_tools package).

2005

1 November 2005

The seventh annual PhysioNet/Computers in Cardiology Challenge has begun. Challenge 2006 offers participants an opportunity to establish the accuracy and reliability of fully automated methods for measuring QT intervals, a topic of interest since regulatory agencies around the world currently endorse only manual and semi-automated methods in clinical trials for new drugs. Visit the Challenge 2006 home page to learn more.

4 October 2005

The winners of the PhysioNet/Computers in Cardiology Challenge 2005 are R Povinelli of Marquette University, and the team of C Raab, N Wessel, A Schirdewan, and J Kurths of the University of Potsdam. Learn more at the Challenge 2005 home page.

24 February 2005

The entire MIT-BIH Arrhythmia Database is now freely available in PhysioBank. Somewhat more than half of the database has been available here since PhysioNet's inception; the remainder has now been posted.

1 February 2005

PhysioToolkit's most capable tool for viewing, analyzing, and annotating physiologic signals, WAVE, is now available for MS-Windows. WAVE was developed under SunOS and GNU/Linux, and it also runs under Solaris, FreeBSD, and Mac OS X. A single set of WAVE sources supports all of these platforms, so that WAVE behaves identically on any of them.

2004

15 December 2004

New in PhysioToolkit is puka, software that detects respiratory phase in strain gauge belt recordings, and that works together with other PhysioToolkit and open-source software to analyze respiratory and cardiac rhythms and their relationships. puka was contributed by its author, Joset Etzel of Iowa State University.

13 December 2004

Users of some recent Linux kernels (including those supplied with Fedora Core 2 and 3) have been unable to use certain features of WAVE, because these kernels are not completely compatible with the XView libraries needed by WAVE. New XView packages are now available for use with these recent kernels; they restore access to all of the features of WAVE; see this note for details.

31 October 2004

Read about the winners of the PhysioNet/Computers in Cardiology Challenge 2004 here! This year's challenge invited participants to develop methods for predicting if (or when) an episode of atrial fibrillation will self-terminate. The final results have been posted, together with abstracts of the participants' papers, the winning software entries, and additional information about the challenge.

29 October 2004

Measurements of postural sway in healthy elderly and young volunteers, with and without subsensory stimulation of the soles of the feet to improve balance control, are available in a new database, Noise Enhancement of Sensorimotor Function.

27 October 2004

Software for multifractal analysis of time series has been contributed to PhysioToolkit by its author, Yossi Ashkenazy, and is now available here.

26 October 2004

IBS is a novel linguistic analysis method that has been successfully applied to studies of inter-beat interval time series, the origin of the SARS coronavirus, and the authorship of Shakespeare's plays. Software and an IBS tutorial are available here.

25 September 2004

New in PhysioBank is the PTB Diagnostic ECG Database, a collection of 549 high-resolution 15-lead ECGs (12 standard leads together with Frank XYZ leads), including clinical summaries for each record. From one to five ECG records are available for each of the 294 subjects, who include healthy subjects as well as patients with a variety of heart diseases.

17 September 2004

Software for evaluating ST analyzers has been contributed to PhysioToolkit by its authors, Franc Jager and Aleš Smrdel of the Laboratory of Biomedical Computer Systems and Imaging at the University of Ljubljana (Slovenia).

4 August 2004

New in PhysioToolkit is software for multiscale entropy (MSE) analysis. This approach is useful for study of time series that have correlations at multiple scales. A new tutorial illustrating the application of the MSE method to analysis of interbeat (RR) interval time series accompanies the software.

2 July 2004

The CAST RR Interval Sub-Study Database has been contributed to PhysioBank. The database contains a set of beat annotation files (about 24 hours each) from 809 subjects enrolled in the Cardiac ArrhythmiaSuppression Trial (CAST), a landmark NHLBI-sponsored study. For 734 subjects, separate baseline (pre-treatment) and on-therapy records are available; the database consists of 1543 records in all, including roughly 150 million RR interval measurements.

PhysioNet has inaugurated the Sudden Cardiac Death Holter Database. This is a collection of long-term ECG recordings of patients who experienced sudden cardiac death during the recordings. Half-hour excerpts of these recordings have been (and remain) available as the MIT-BIH Malignant Ventricular Ectopy Database. The new database includes a set of unaudited beat annotation files and an incomplete set of audited annotation files. Interested researchers are invited to contribute additional recordings and to join in the effort to complete a thorough and rigorously reviewed set of reference-quality annotation files for these unique recordings.

4 May 2004

Sorry for the interruption! The main PhysioNet server was off-line for about 45 minutes on 3 May during a power outage that affected a large portion of the city of Cambridge, including the MIT campus. Our backup power kept the server available for the first 25 minutes of the outage, which was the first to cause an interruption since PhysioNet was inaugurated almost 5 years ago. If you ever find that you can't reach PhysioNet, use Google to search for "physionet mirrors".

1 May 2004

PhysioNet/Computers in Cardiology Challenge 2004 update: Twenty particpants submitted initial results for scoring before the first deadline passed. If your initial results were received before the first deadline, any results you submit before the final deadline of 14 September can be used to improve your standing. If you missed the first deadline, you may still submit results for unofficial scores.

11 April 2004

The latest in our annual series of challenges has been underway for several months. This year's challenge asks if it is possible to predict if (or when) an episode of atrial fibrillation will end spontaneously. Visit the Challenge 2004 home page to learn more.

The autoscorer is now available to challenge participants. Submit your entry using the autoscorer and receive your score by return email within a few minutes. Top scores are also available and are continously updated by the autoscorer.

2003

9 December 2003

The Long-Term ST Database has been updated with the addition of detailed clinical notes and ST deviation trend plots for all 86 records of the database.

6 December 2003

A beta release of the WFDB_tools package is now available for testing. This package allows Matlab R13 users to use the WFDB library to read and write digitized signals and annotations such as those available from PhysioBank. The WFDB_tools functions are wrappers for the WFDB library, so that Matlab users can access the full range of capabilities offered by current and future versions of the WFDB library, including transparent access to data in a large and growing number of formats, whether stored locally or on remote web servers. The package was written and contributed by Jonas Carlson. It has been tested successfully under GNU/Linux and MS-Windows, and it should be portable to MacOS X and other platforms supported by Matlab R13.

3 December 2003

Patrick McSharry and Gari Clifford have contributed ECGSYN, software for generating a realistic ECG signal with a wide variety of user-settable parameters. The package includes C, Java, and Matlab/Octave implementations, together with a paper describing the model.

23 October 2003

The NHLBI-sponsored multi-center Sleep Heart Health Study has contributed the first of a planned set of 1000 overnight polysomnograms to PhysioBank. The study has investigated the relationship between sleep disordered breathing and cardiovascular disease since 1995. The data include EEG, EOG, EMG, ECG, nasal airflow and respiratory effort signals, SaO2 and heart rate measurements, and annotated sleep stages, respiratory events, EEG arousals, and more.

17 October 2003

Version 10.3.11 of the WFDB software package incorporates many improvements over previous versions; a summary of recent changes is available here. Sources, GNU/Linux and MS-Windows binaries, and revised manuals are now available.

8 October 2003

The PhysioNet/Computers in Cardiology Challenge 2004 is underway! The topic is spontaneous termination of atrial fibrillation. The challenge data set is available now; further details about the challenge will be posted shortly.

14 July 2003

The master PhysioNet server has been replaced by a new server with greater capacity and speed. Please report any problems you encounter by clicking on the comments link at the bottom of most pages (or to webmaster@physionet.org).

Among the new features of this server are significantly improved Advanced Search and Chart-O-Matic facilities, and the complete MGH/MF Waveform Database.

6 June 2003

A two-lead ECG recording that was selected for inclusion in the AHA Database for Evaluation of Ventricular Arrhythmia Detectors, but eventually excluded, is now available here.

3 May 2003

Participants in the PhysioNet/Computers in Cardiology Challenge 2003 have an extra week to submit abstracts describing their work, since the conference has extended the abstract deadline to Thursday, 8 May.

16 April 2003

Robert Tratnig and Klaus Rheinberger have contributed a Matlab viewer that reads and displays many PhysioBank records, the latest in a collection of software for Matlab and Octave contributed by PhysioNet users.

An effort is now underway to create a set of Matlab wrappers for the WFDB library. Such wrappers would allow Matlab applications to make use of the full range of capabilities offered by the WFDB library, including direct access to records stored on PhysioNet and other web servers in addition to local disk files, support for a wide and growing variety of data formats using a uniform API, resampling on-the-fly, and much more. If you are interested in contributing to this project, whether as a developer, a tester, or a documentation writer, please write and let us know how you would like to participate.

14 April 2003

The creators of the Long-Term ST Database have contributed a paper describing the database (available as HTML or PDF).

14 March 2003

Several of the participants in the first PhysioNet/Computers in Cardiology Challenge, together with the organizers, have published a joint paper that compares the methods used in the challenge and investigates how to combine several of the most successful strategies for detecting and quantifying sleep apnea based on the ECG. This paper appeared last year in Medical & Biological Engineering & Computing, and it can now be read on-line [external link, PDF].

9 March 2003

PhysioNet is made possible by the generous contributions of a worldwide community of researchers. We are pleased to inaugurate the PhysioNet Contributors Page, a who's who of those who have made this resource what it is.

8 March 2003

A heartprint is a novel way of visualizing the dynamics of ventricular ectopy. Software for creating heartprints from beat annotation files or RR interval lists has been contributed to PhysioToolkit.

7 March 2003

A pair of papers discussing the effects of trends and nonstationarities on detrended fluctuation analysis (DFA), together with the surrogate data on which these studies were based, have been contributed to PhysioBank.

6 March 2003

The fourth annual PhysioNet/Computers in Cardiology Challenge has begun. Is it possible to tell the difference between transient ST changes in the ECG that are due to myocardial ischemia, and those that are not? We invite you to participate in this challenge, making use of the recently completed Long-Term ST Database to study this provocative question.

5 March 2003

A new tutorial, RR Intervals, Heart Rate, and HRV, provides a brief overview of how to obtain inter-beat (RR) interval and heart rate time series, and of some basic methods for characterizing heart rate variability, using freely available PhysioToolkit software.

4 March 2003

The Intracardiac Atrial Fibrillation Database is a new collection of high-resolution recordings from eight subjects in atrial fibrillation or flutter. Each recording includes three surface ECG signals and five intracardiac signals, all simultaneously recorded. These are the first freely available recordings of their type.

3 March 2003

Software for measuring pNNx, a family of time-domain heart rate variability statistics of which the widely-used pNN50 is a member, has been contributed to PhysioToolkit. The study that introduced pNNx made use of several PhysioBank databases as well as additional data that have also been contributed to PhysioBank, including the Congestive Heart Failure RR Interval Database, the Normal Sinus Rhythm RR Interval Database, and the remainder of the Fantasia Database (see the news item for 2 March below).

The Congestive Heart Failure RR Interval Database includes beat annotations (about 24 hours each, no ECGs) for 29 subjects with congestive heart failure (NYHA classes 1, 2, and 3).

The Normal Sinus Rhythm RR Interval Database also includes 24-hour beat annotation files for 54 subjects in normal sinus rhythm.

2 March 2003

A subset of data from the Fantasia Database has been available here for several years; the remainder of the database is now available. It consists of ECG and respiration recordings, with beat annotations, from 20 young and 20 elderly subjects, all rigorously screened as healthy, in sinus rhythm during a resting state (two hours each). Half of the recordings also include (uncalibrated) continuous noninvasive blood pressure signals.

28 February 2003

The creators of the Long-Term ST Database have contributed half of it (43 of 86 complete records) to PhysioNet. Each record is 21 to 24 hours long, and contains 2 or 3 ECG signals, annotated beat-by-beat and with respect to ST episodes, rhythm changes, and signal quality changes; each record also includes ST level time series based on 16-second averages centered on each beat.

25 February 2003

Version 10.3.2 of the WFDB Software Package has just been released, with new several new applications and numerous updates; see the release notes for details.

3 January 2003

A standard set of test waveforms, as specified by ANSI/AAMI EC13 (the American National Standard for cardiac monitors, heart rate meters, and alarms), is now available in PhysioBank.

2002

12 December 2002

The Sleep-EDF Database is a collection of sleep recordings from healthy subjects contributed to PhysioBank by Bob Kemp. These recordings are presented in European Data Format (EDF), a standard for archiving and exchanging polysomnographic recordings. It's easy to read and write EDF files using the format converters available in PhysioToolkit.

A gentle introduction to much of the software available on this site is offered by Applying PhysioNet tools to manage neurophysiological signals, a tutorial with data and hands-on exercises contributed by Jesus Olivan Palacios.

5 December 2002

An arterial blood pressure (ABP) pulse detector for continous ABP signals has been added to version 10.3.1 of the WFDB Software Package, which has just been posted. Read about other new features here.

26 November 2002

Version 10.3.0 of the WFDB Software Package has just been released, with many new features. Highlights include a port to MacOS/X; a new WFDB library interface permitting random access to digitized signals; a new QRS detector; a new application for signal averaging; up-to-date binaries for GNU/Linux, MS-Windows (including, for the first time, a WFDB DLL), and Solaris; updated manuals; and more.

17 November 2002

Version 2.2 of plt adds support for MacOS/X and an updated manual.

13 November 2002

A new and improved version of Floyd Harriott's ECG waveform generator has been posted.

8 November 2002

An application for exporting PhysioBank records in EDF (European Data Format) is now available; find it here [link updated 25 November 2002]. The complementary application for converting EDF recordings into PhysioBank format has been available as part of the WFDB Software Package for several years.

7 November 2002

Version 2.1 of plt, PhysioToolkit's scriptable plotting utility, is now available for GNU/Linux, MS-Windows, and in source form for other platforms.

31 October 2002

New XView packages have been posted for Red Hat GNU/Linux 7.x and 8.x. XView provides the GUI elements of WAVE and SEMIA; the new packages incorporate many bug fixes and provide a more stable GUI for WAVE and SEMIA under GNU/Linux.

30 October 2002

Final versions of five complete (24-hour) records from the Long-Term ST Database are now available, together with SEMIA, a tool for viewing the detailed trend data, annotations, and ECG signals from these records. More records from this database will be available shortly.

26 October 2002

New editions of the WFDB Software Package's manuals have been posted, with many revisions, additions, corrections, and cross-references. All are available in HTML for on-line reference as well as in PDF and PostScript versions for download and printing.

26 September 2002

The RR interval time series models that were entered into event 1 of the PhysioNet/Computers in Cardiology Challenge 2002 are now available for study. Each of the ten models is implemented as a self-contained C program that can generate a synthetic RR interval time series of at least 24 hours' duration.

8 August 2002

Using the AHA Database with PhysioToolkit is easier than ever with the new ahaconvert script (batch file) for importing data from AHA CD-ROMs.

24 June 2002

Most PhysioToolkit software uses the WFDB library to read and write PhysioBank-format files; the library is also available for use in your own programs. Beginning with version 10.2.6, applications that use the WFDB library can choose any convenient sampling frequency, and the library will transparently resample input signals at that frequency.

10 June 2002

The Massachusetts General Hospital/Marquette Foundation (MGH/MF) Waveform Database is a collection of 250 recordings of hemodynamic and electrocardiographic waveforms of patients in critical care units. Typical recordings include three ECG signals, ABP, PAP, CVP, respiratory impedance, and airway CO2 waveforms. The first 25 recordings of the MGH/MF Waveform database are now available here. Update: the entire database is now available.

29 May 2002

A brief overview of multifractal time series has been posted in the Tutorials section of PhysioNet.

9 May 2002

The top scores for the PhysioNet/Computers in Cardiology Challenge 2002 have now been posted. Congratulations to the winners, and thanks to all who participated!

24 April 2002

Event 2 of the PhysioNet/Computers in Cardiology Challenge 2002 has now begun. You are invited to match wits with participants in event 1, who have created a variety of realistic models of interbeat (RR) interval time series. Can you spot the simulations hidden among the real data in the challenge dataset?

18 April 2002

An algorithm for assessing physical activity from a heart rate time series, and a paper describing its development and evaluation, are now available in PhysioToolkit.

10 March 2002

The WFDB Software Package is one of the centerpieces of PhysioToolkit, and is revised frequently. Version 10.2.5 has just been posted, together with an updated set of tutorials and reference manuals. The 10.2 series, which has been tested extensively since mid-October, represents a significant advance over previous versions (see this list of changes and new features); please try it out!

14 February 2002

We are pleased to announce the latest in our annual series of PhysioNet/Computers in Cardiology Challenges. The topic for this challenge is RR interval time series modeling. Can you create a model that produces realistic short-term and long-term variations in interbeat intervals? Can you distinguish between synthetic and real RR interval time series? Take the challenge!

7 February 2002

Software for locating waveform boundaries in the ECG (i.e., the beginnings, peaks, and ends of P, QRS, and T waves) has been contributed to PhysioNet. The software can be used to analyze either annotated or unannotated recordings (it includes an implementation of the Pan-Tompkins QRS detection algorithm).

5 February 2002

A new tutorial, Morphology Representation Using Principal Components, presents practical methods and sample code for deriving noise-tolerant measurements of waveform shape, using the QRS complex of the ECG as an example.

4 February 2002

Software for automated detection of obstructive sleep apnea from the ECG has been contributed to PhysioToolkit. The apdet software package was written as an entry in the Computers in Cardiology Challenge 2000.

2001

15 December 2001

PhysioNet's Challenges are the subject of a feature article in New Scientist ("Off-Beat", 15 December 2001, pp. 33-35). The article may be read here (registration required).

26 November 2001

The latest addition to PhysioNet's growing collection of tutorials is Exploring Patterns in Nature, a set of interactive tutorials focussing on emergent phenomena (random behavior at the smallest scales leading to patterns at larger scales). Subjects include fractal dimension, measuring randomness, physical and chemical branching structures, biological branching patterns, diffusion, percolation, and motion on a fractal.

11 November 2001

New software for detrended fluctuation analysis (DFA) has been posted, together with notes on its use.

26 September 2001

Final scores have been posted for the Computers in Cardiology Challenge 2001. Thanks to all who participated!

19 September 2001

RCVSIM is an open-source cardiovascular simulator for research, designed for compatibility with PhysioBank data formats and PhysioToolkit analysis software. The sources are extensively commented to facilitate modifications and extensions to suit the needs of specific research projects, and a comprehensive user's guide is available.

16 August 2001

A new collection of Long-term Recordings of Gait Dynamics: Unconstrained and Metronomic Walking has been added to PhysioBank. Sixty hours of stride interval time series from ten healthy volunteers exhibit long-range correlations in unconstrained walking and anti-correlations during metronomic walking.

28 July 2001

GTKWave is a reimplementation of the original WAVE application for viewing, analyzing, and annotating PhysioBank recordings, with a modern GUI that is portable between Unix and MS-Windows. A beta version of GTKWave is now available, including sources, Linux binaries, and MS-Windows binaries. Please try it out!

1 March 2001

Can paroxysmal atrial fibrillation be predicted? PhysioNet and Computers in Cardiology 2001 challenge you to develop and evaluate a method for doing so, in CinC Challenge 2001, the second in an annual series of open contests aimed at catalyzing research, friendly competition, and wide-ranging collaboration around this clinically important problem. Prizes will be awarded to the most successful participants. Update (21 September): The challenge has ended, and no additional entries will be accepted.. You may still obtain unofficial scores if you wish to try the challenge; look here for further information.

11 January 2001

ISI (Institute of Scientific Information, publishers of the Current Contents index of peer-reviewed scholarly journals, books, and proceedings) has selected PhysioNet for inclusion in Current Web Contents, a newly established index of evaluated scholarly web sites.

2000

21 December 2000

A database of Gait Dynamics in Neuro-Degenerative Disease has been added to PhysioBank. This database includes recordings of gait from subjects with Parkinson's disease, Huntington's disease, amyotrophic lateral sclerosis (ALS), and healthy controls.

29 November 2000

Five complete (21 to 24 hour) records from the Long-Term ST Database have been contributed to PhysioBank, together with a pair of papers describing the database [1, 2]. This six-year multinational project is nearing completion. These are the first recordings to be made available from this database.

4 November 2000

Previously unreleased signal files for the MIT-BIH Atrial Fibrillation Database have been added to PhysioBank.

14 October 2000

The BIDMC Congestive Heart Failure Database has been added to PhysioBank. This database includes fifteen 20-hour recordings of patients with severe heart failure (NYHA class 3-4).

7 October 2000

The Chart-o-matic is now available for viewing PhysioBank data within any web browser capable of rendering PNG images (such as those on this page). Please try it out!

30 September 2000

Over half of the European ST-T Database is now freely accessible in PhysioBank, thanks to the support of the European Society of Cardiology and the creators of the database.

22 September 2000

Final scores for Computers in Cardiology Challenge 2000 are now posted. Thanks to all who participated in this outstandingly successful event!

4 August 2000

PhysioNet is the subject of a feature article published by the daily science news service UniSci today. The article highlights the highly successful Computers in Cardiology Challenge 2000, which has stimulated efforts by researchers worldwide to develop methods for detecting and quantifying sleep apnea using the ECG only, and to evaluate these methods using a large database available from PhysioBank.

11 July 2000

Links²Go
Biophysics

PhysioNet has been selected as one of 23 "Key Resources" on the web in biophysics.

28 June 2000

Our article titled PhysioBank, PhysioToolkit, and PhysioNet: Components of a New Research Resource for Complex Physiologic Signals has just been published in Circulation. By special arrangement this article can be read on Circulation's web site without restrictions. If you make use of data or software from PhysioNet, please cite this article.

23 June 2000

The master PhysioNet web server at MIT in Cambridge, Massachusetts has been visited from over 10,000 different locations in about 70 countries around the world during its first 10 months of operation. During that period it has delivered more than 100 gigabytes of data (not including data transmitted to or by the PhysioNet mirrors).

11 June 2000

Precompiled binaries (ready-to-run versions) of the WFDB Software Package for 32-bit MS-Windows (95/98/NT/2000) and Solaris now include NETFILES support (built-in HTTP and FTP client support, making it possible to view and analyze PhysioBank recordings without downloading them to local storage, and without a web browser). This feature has been available under Linux since last September.

Precompiled binaries without NETFILES support are now available for HP-UX as well.

26 April 2000

The deadline for entries in the Computers in Cardiology Challenge 2000 has been extended. (The deadline for submitting abstracts for the conference has not changed, however.)

The WFDB Software Package is now available in RPM form for easy installation under Linux.

12 April 2000

Precompiled binaries (executables) of the WFDB Software Package for 32-bit MS-Windows (95/98/NT/2000) have been added to those previously available for Linux, MS-DOS and 16-bit MS-Windows, Solaris, and SunOS.

Entrants in the Computers in Cardiology Challenge 2000 can now submit their results for scoring.

9 April 2000

Binary annotation and signal files from PhysioBank can now be converted to text format from your web browser. The conversions are performed using rdann and rdsamp , two utilities from the WFDB software package that can also be downloaded and run on your own computer for greater flexibility.

A list of frequently asked questions (with answers) is now available.

5 April 2000

Science's NetWatch features PhysioNet in its issue of 31 March 2000. (A subscription or free registration is required to visit this site.)

19 March 2000

Software for deriving a respiration signal from one or two ECG signals using the EDR technique, the original paper that describes this technique, and a second paper describing applications of the EDR, are now available in PhysioToolkit.

17 March 2000

PhysioNet has been chosen as HMS Beagle's "Web Pick of the Day".

15 March 2000

Periodic measurements of physiologic variables (such as heart rate, blood pressure, respiration rate, and oxygen saturation) are now available for all 121 records of the MIMIC Database. These data amount to nearly 200 patient-days of continuous recordings from over 90 ICU patients.

29 February 2000

PhysioToolkit is the new name for our library of open-source software, formerly known as PhysioTools.

10 February 2000

Can sleep apnea be detected using the ECG only? PhysioNet and Computers in Cardiology 2000 challenge you to develop and evaluate a method for doing so, in CinC Challenge 2000, an open contest aimed at catalyzing research, friendly competition, and wide-ranging collaboration around this clinically important problem. Prizes will be awarded to the most successful participants.

20 January 2000

See the additions to the Tutorials and Publications sections of PhysioNet.

1999

16 November 1999

The QT Database is now on-line, with over 100 fifteen-minute two-lead ECG recordings (many excerpted from other databases), with onset, peak, and end markers for P, QRS, T, and (where present) U waves of from 30 to 50 selected beats in each recording.

28 October 1999

The PhysioNet Publications pages have been started, with the contribution of a paper on human gait maturation together with the raw data on which the study was based (now a Class 2 database available from the PhysioBank on-line archives). Look for more papers and data in the coming weeks and months. If you have data or software that may be of interest to other users of PhysioNet, and a related publication, please consider contributing a copy of your publication and its supporting data or software to the Publications pages. We also encourage contributions of publications that make use of existing PhysioBank data or PhysioTools software. The first of a planned series of tutorials is now available. These tutorials emphasize hands-on exploration of the data and software available via PhysioNet. The first tutorial introduces detrended fluctuation analysis and approximate entropy in the context of studying changes in gait and heart rate dynamics with age and disease. Your feedback is welcome!

17 September 1999

Now available: a beta version of the WFDB software package, with built-in HTTP and FTP client support for WFDB applications. It is possible to view and analyze PhysioBank recordings using any of these applications without downloading them to local storage first, and without the use of a web browser.

10 September 1999

The software component of the resource, formerly known as PhysioLab, has been renamed PhysioTools.

9 September 1999

The text of the PhysioNet web site is now indexed and searchable.

5 August 1999

www.physionet.org is up and running, in preparation for a full-scale launch of PhysioNet in September. Your comments are welcome!

3 August 1999

The PhysioBank Archives have been established, with over two gigabytes of data now available for downloading. An Introduction to the PhysioBank Archives is available, with links to excerpts from many databases.

26 June 1999

Guidelines for contributors added.

22 June 1999

Year 2000 Readiness Disclosure added.

18 June 1999

The WFDB Software Package source tree is now fully browsable.

12 June 1999

Our prototype web server is now on-line!

A preview of the WFDB Software Package may now be downloaded in source form. This is a GPLed successor to the DB Software Package from MIT, now incorporating the WAVE and WVIEW interactive visualization tools.

Samples of PhysioBank data may be downloaded.

7 June 1999

Our domain name, physionet.org, has been registered.

Questions and Comments

If you would like help understanding, using, or downloading content, please see our Frequently Asked Questions. If you have any comments, feedback, or particular questions regarding this page, please send them to the webmaster. Comments and issues can also be raised on PhysioNet's GitHub page. Updated Thursday, 11 April 2019 at 21:02 EDT

PhysioNet is supported by the National Institute of General Medical Sciences (NIGMS) and the National Institute of Biomedical Imaging and Bioengineering (NIBIB) under NIH grant number 2R01GM104987-09.